Genespace synteny analysis
收藏Figshare2025-08-01 更新2026-04-28 收录
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https://figshare.com/articles/dataset/Genespace_synteny_analysis/28661705
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资源简介：
genespace_genomes contains translated cds .faa and genomic gff annotation files for three taxa (B. pensylvanicus, B. affinis, B. huntii) needed for the R code below. Results can be replicated by running the R code for GENESPACE (see https://github.com/jtlovell/GENESPACE for software and other requirements).R-code for running Genespace:library(GENESPACE)genomeRepoworkdirparsedPaths rawGenomeRepo = genomeRepo, genomeDirs = c("affinis", "huntii", "pens"), genomeIDs = c("affinis", "huntii", "pens"), presets = "ncbi",troubleShoot = TRUE, genespaceWd = workdir)gpar wd = workdir, path2mcscanx ="GenomeSoftware/MCScanX-master")out
创建时间：
2025-08-01
