Gene coexpression data in ALCOdb
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https://zenodo.org/record/10072282
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资源简介：
Coexpression data provided in ALCOdb.
Details of the data can be found on the download page in ALCOdb. http://alcodb.jp/coexpression/download
Coexpression data
Cre.v15-08.G15519-S172.quantile.mrgeo.d.zip
Cre.v15-02.G15540-S180.qnorm.mrgeo.d.zip
Cre.v13-10.G18773-S137.qnorm.mrgeo.d.zip
Cme1.v14-06.G4586-S75.d.zip
Cme2.v14-06.G6506-S48.d.zip
Gene expression table to calculate the coexpression data
Cre-R1-15-08_GeneExpressionTable.tsv.gz
Cme1_GeneExpressionTable.tsv.zip
Cme2_GeneExpressionTable.tsv.zip
Codon usage similarity for evaluation
Cre_v55.CodonUsage.G17741.zip
Data Format
Gene coexpression data folder contains a number of files, and file names correspond to the query gene IDs. Each file includes the coexpressed gene list as in the following format (Example about Cre01g001400 in cre.v15-08.G15519-S172.quantile.mrgeo.d).
File Name: Cre01g001400
Line1: Cre03g197300 1.00 0.8352
Line2: Cre13g605200 6.63 0.6938
Line3: Cre09g411751 7.35 0.7082
Line4: Cre15g638551 9.38 0.7128
Line5: Cre01g037600 10.25 0.6761
Columns are tab-deliminated.
Lines are sorted by column2.
Column1: ID of coexpressed gene.
Column2: Matual Rank (MR). [smaller MR indicates stronger coexpression]
Column3: Pearson's Correlation Coefficient (PCC). [larger PCC indicates stronger coexpression]
创建时间：
2024-01-20
