De novo whole genome assembly of the giant tiger prawn (Penaeus monodon) from Vietnam
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Basecalled Nanopore FastQ files for the Vietnamese giant tiger prawn and its genome assemblies. FastQ files (LSK109 sample prep sequenced on a MinION device for 48 hours). Read stats are in *_stat.txt: TP_A.fastq : gDNA was extracted using Zymo quick DNA minikit from ethanol-preserved muscle tissue TP_B.fastq : Same as TP_A.fastq TP_C.fastq : gDNA was extracted using conventional salting out method (longer read length but reduced yield) Assemblies: v1_MaSuRCA.fasta: Assembly using poly-G trimmed Illumina reads v2_NanoporeScaf.fasta : Scaffolding with Nanopore long reads v3_RNA_NanoporeScaf.fasta: Scaffolding of v2 with RNA reads v4_NCBI_Filt.fasta: post NCBI contaminant and carry-over adapter removal (final version)
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Zenodo创建时间：
2019-06-24
