Table S1 - Differential Gene Repertoire in Mycobacterium ulcerans Identifies Candidate Genes for Patho-Adaptation

CDSs inactivated in RDs1 through 15 across the M. ulcerans haplotypes. CDSs are listed in the order of the M. marinum annotation. Note that only CDSs are listed where M. ulcerans haplotypes differ from each other. Thus, not all MURDs distinguishing the classical lineage from M. marinum in these regions are mentioned but are found elsewhere [11]. All CDSs deleted in more than one haplotype were lost in independent events except when indicated (* = probably not independently deleted). When deleted or pseudogenized, CDSs are indicated in the M. ulcerans Agy99 annotation, where possible, and in the M. marinum M annotation where no M. ulcerans orthologue exists. When found present, respective CDSs are indicated as ��present��. CDSs where no M. marinum orthologue exists are indicated ��na�� ( = not applicable). The Mexican haplotype could not be tested for all RDs that affected other haplotypes, as indicated ��nd��( = not determined), therefore, the number of CDSs deleted in the Mexican haplotype is underestimated. (0.04 MB PDF)