Dual Simulated SEND and EDX dataset

A simulated SEND + EDX dataset along with the code used to produce it.

code

SEND_ground_Truth_Segment_Model-AB.ipynb (ipynb which outlines the code for end to end data production, however some of the actual SEND data production is done through the gen_data.py and add_noise.py files due to system memory requirements making a cluster job more convenient)

gen_data.py (python file for creating an intermediate simulated SEND dataset)

add_noise.py (python file that takes the intermediate SEND dataset and samples it to produce pseudo-experimental data)

phase_maps

Contains pairs of jpg/npy files that show/quantify the proportional of each phase at each pixel location as constructed in the atomic model

data

SEND.hspy (the simulated SEND dataset as per the atomic model)

EDS.hspy (the simulated EDS dataset)

atomic_model.xyz (ASE atomic model for the simulated data)

labelled_voxels.npy (the phase labels for the 3d array of volumetric-pixels used to produce the atomic model)