Closed genomes from hybrid assembly of avian pathogenic E.coli from Denmark

Both of Illumina and Nanopore portals were used to obtain 6 fully closed genomes of two vertically transmitted avian pathogenic E.coli lineages, ST95 and ST131. These genomes were used to perform phylogenetic analysis, as well as resistant genes, virulence genes and plasmid replicons detection. Completely closed genomes obtained from hybrid assembly were also intended to be used as reference genomes in upcoming study.