Additional file 1 of Graph pangenome reveals the regulation of malate content in blood-fleshed peach by NAC transcription factors

Additional file 1. Table S1. Summary statistics of the sequencing data for HJML and FHYL. Table S2. Statistics of the HJML and FHYL genome assemblies. Table S3. Assessments of the HJML and FHYL genome assemblies. Table S4. Summary statistics of repeat sequences. Table S5. Published genomes of P. persica used for graph pangenome construction. Table S6. GO enrichment of different categories of genes in the gene-based pangenome. Table S7. Location of SVs in the HJML genome. Table S8. GO enrichment of protein-coding genes with exons overlapping SVs in the cultivated peach pangenome. Table S9. List of peach accessions used for genome resequencing and GWAS. Table S10. List of genes containing SVs with higher reference allele frequencies in peach Group VI, within their upstream 2 kb regions. Table S11. List of genes containing SVs with higher reference allele frequencies in peach Group VI, within their exons. Table S12. List of genes containing SVs with higher reference allele frequencies in peach Group I, within their upstream 2 kb regions. Table S13. List of genes containing SVs with higher reference allele frequencies in peach Group I, within their exons. Table S14. List of 38 wild peachaccessions. Table S15. Expression of PpBL, malate content and flesh color in individuals of the F1 population. Table S16. RNA-Seq data used for gene predictions. Table S17. Primers and other oligonucleotides used in this study.