Xerophyta humilis raw transcriptome
收藏zivahub.uct.ac.za2019-10-22 更新2025-01-15 收录
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https://zivahub.uct.ac.za/articles/dataset/Xerophyta_humilis_raw_transcriptome/9956264/1
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Dataset for the article Vegetative desiccation tolerance in the resurrection plant Xerophyta humilis has not evolved through reactivation of the seed canonical LAFL regulatory network.Raw transcripts from Trinity de novo assembly of combined seed and leaf Xerophyta humilis samples. Transcript IDs are the Trinity transcript ID followed by the unique gene cluster ID if one is present (example: TRINITY_DN164427_c0_g1_i1|Xh025390c1). Gene cluster IDs denote sets of transcripts that passed RapClust filtering and mapped uniquely to the same genomic locus on the draft Xerophyta humilis genome (and thus represent putative isoforms or fragments of the same gene).
本研究数据集来源于论文《Xerophyta humilis 草本植物耐旱性研究:其种子及叶片转录组的重新组装并未通过种子经典 LAFL 调控网络的重新激活而进化》。数据集包含对 Xerophyta humilis 种子与叶片样本的 Trinity 重新组装的原始转录本。转录本标识符由 Trinity 转录本 ID 组成,若存在,则后跟独特的基因簇 ID(例如:TRINITY_DN164427_c0_g1_i1|Xh025390c1)。基因簇 ID 指的是一组通过 RapClust 过滤且唯一映射到 Xerophyta humilis 基因组草图上相同基因组位点的转录本(因此代表同一基因的假基因或片段)。
提供机构:
University of Cape Town



