MOESM2 of Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm

Additional file 2: Table S2. List of the 253,095 robust SNPs used in the study, with their chromosome location, and position on chromosome, in bp. SNPs located on chromosome 18 are those located on contigs or scaffold that could not be attributed to a chromosome. SNPs located on chromosome 19 are those for which no clear position could be found (either no BLAST results for the probe, or several equivalent results). Inclusion of a SNP in the 25 K subset is indicated by a “yes” in column “in.25 K.subset”.