File S1 - Complex Interplay among DNA Modification, Noncoding RNA Expression and Protein-Coding RNA Expression in Salvia miltiorrhiza Chloroplast Genome

Contains the files: Figure S1. Characteristics of SMRT sequencing results: (A) length distribution of sequence reads; (B) depth of coverage across the assembled chloroplast genome; and (C) abundance of various lengths of reads mapped to the chloroplast genome. Table S1. Primers used for sequence assembly validation. Table S2. Primer sets used for strand-specific real-time qPCR. Table S3. Statistical testing of RNA-Seq and ss-qPCR results using one-sample t test. Table S4. Detailed information on motif CPGDMM1. Table S5. Detailed information on motif CPGDMM2. Table S6. Associations between DNA modification site (DMS) and downstream ncRNA expression. Table S7. Analysis of the effect of DNA modification at the CPGDMM1 motif on the abundance of ncRNA using ANOVA. (DOC)