Datasets for Sudianto et al. (2025) Horizontal Gene Transfers Underpin Ribose Heterotrophy and Central Carbon Metabolism Remodeling in Gloeobacteraceae

README.mdthis filealiThis directory contains an archive (.tar.gz) consisting of the OmpaPa result alignment files with .ali extensionalignment-clipkitThis directory contains an archive (.tar.gz) consisting of the OmpaPa result alignment files after clipkit trimmingAnnotationThis directory contains an archive (.tar.gz) consisting of the annotation for 343 cyanobacterial genomes used in this studygenomeThis directory contains an archive (.tar.gz) consisting of the 343 genomes used in this studyHMMsearchThis directory contains an archive (.tar.gz) consisting of the output of profile HMM search in the GTDB R220 representative species searchHOG_sequencesThis directory contains an archive (.tar.gz) consisting of the fasta sequences from HOG of interest in our datasetOmpaPa_resultsThis directory contains an archive (.tar.gz) consisting of the selected OmpaPa outputs (.list) and their configuration (.json)pHMMThis directory contains an archive (.tar.gz) consisting of the profile HMMs of the HOG sequencesphyThis directory contains an archive (.tar.gz) consisting of the OmpaPa result alignment files with .phy extensionscriptThis directory contains the python script used to extract genomic regions of neighboring gene of interestspeciestree_fastaThis directory contains the alignment and idm files for species tree in Figure S1speciestree_treThis directory contains the .tre file for species tree in Figure S1treThis directory contains an archive (.tar.gz) consisting of the gene trees derived from OmpaPa result alignments