Sequencing reads were aligned to the Amel_HAv3.1 reference genome using BWA-MEM v0.7.17. Reads were sorted with SAMtools v1.9 and duplicates marked (MarkDuplicates) with GATK v4.0.11.0. Variants for e
Same summary statistics files as version 2; Added Code (also found here: https://github.com/rosacheesman/Fields_genetics). All versions of this dataset are covered under the same CC BY–NC 4.0 Intern
N, Ndi, I, Ho, He, and uHe refer to as number of all isolates, number of diploid isolates, Shannon's Information index, observed heterozygosity, expected heterozygosity, unbiased expected heterozygosi
The "Tahr_Genetic_data.zip" archive contains the genotypes files for the control region sequencing, the microsatellites and the ddRAD analysis as well as the script for the PCA analysis.