Physical representation of the first 1 Mbp of pseudochromosome 1 in ‘Hongyang’ genome sequence with mapped reads found by stdGBS and rtGBS methods, all treatments, supported by ≥10 reads.

The occurrence of BamH I sites per method and/or plant is denoted by coloured dots: Sites found in all treatments by stdGBS and rtGBS (green dot), found by either one type of library (red and yellow dots), and sites poorly represented by KFE and KFF (pink dot). The extract_aliquot data is denoted by an asterisk, in the following order from top to bottom of each plant_method panel: 2_4, 2_3, 2_2, 2_1, 1_4, 1_3, 1_2, 1_1.