Cellpose model for Digital Phase Contrast images

Name: Cellpose model for Digital Phase Contrast images Data type: Cellpose model, trained via transfer learning from ‘cyto’ model. Training Dataset: Light microscopy (Digital Phase Contrast) and Manual annotations (10.5281/zenodo.5996883) Training Procedure: Model was trained using a Cellpose version 0.6.5 with GPU support (NVIDIA GeForce RTX 2080) using default settings as per the Cellpose documentation python -m cellpose --train --dir TRAINING/DATASET/PATH/train --test_dir TRAINING/DATASET/PATH/test --pretrained_model cyto --chan 0 --chan2 0 The model file (MODEL NAME) in this repository is the result of this training. Prediction Procedure: Using this model, a label image can be obtained from new unseen images in a given folder with python -m cellpose --dir NEW/DATASET/PATH --pretrained_model FULL_MODEL_PATH --chan 0 --chan2 0 --save_tif --no_npy