Additional file 4 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 4: Table S1. A list of (fibroblast, tumor)+ genes found by niche-DE in the integrated 10X liver metastasis colorectal cancer data. Table S2. The list of enriched pathways found by enrichR using the gene list in table S1. Table S3. The list of ligand-receptor pairs found by niche-LR for fibroblasts near tumor cells.