five

Source code, protocol, and Input/Output data. from Towards an information theoretic framework for MSA sub-sampling

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https://figshare.com/articles/dataset/Source_code_protocol_and_Input_Output_data_from_Towards_an_information_theoretic_framework_for_MSA_sub-sampling/27303674
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Source code, protocol, and Input/Output data described in the manuscript. Here is the description of individual files in the zip: 1.File name: Outlier_index.c Legend/Caption: Source code of the program generated experimental data in the manuscript. 2.File name: PROTOCOL.txt Legend/Caption: Description of the experimental protocol 3.File name: tRNA_Mix_ThreeStructures Legend/Caption: Input MSA with 80 sequences fold to Structure A1, 15 sequences fold to Structure A2, and 5 sequences fold to Structure A3 4.File name: tRNA_Pure_Iteration_1.fa Legend/Caption: Remainder sequences when the first iteration process halts. 5.File name: tRNA_Removed_iteration_1 Legend/Caption: Removed sequences when the first iteration process halts. 6.File name: tRNA_Pure_iteration_2 Legend/Caption: Remainder sequences when the second iteration process halts. 7.File name: tRNA_Removed_iteration_2 Legend/Caption: Removed sequences when the second iteration process halts. 8.File name: tdev_threemix.csv Legend/Caption: Standard deviations of Q(x) in the first iteration 9.File name: stdev_threemix_ita2.csv Legend/Caption: Standard deviations of Q(x) in the second iteration 10.File name: removal_threemix.csv Legend/Caption: Sequence labels of sequential row removal in the first iteration 11.File name: removal_threemix_ita2.csv Legend/Caption: Sequence labels of sequential row removal in the second iteration
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