Files used to develop and test SLAG, Seeded Local Assembly of Genes

This dataset consists of configuration files and results files involved in
developing and testing SLAG, an iterative Perl pipeline to construct local
assemblies seeded on query sequences.  SLAG is intended for
situations where a full genome assembly is economically or technically
infeasible, and thus it emphasizes methods that can deal with shallow read
depth.  SLAG and its user-runnable test suite have been deposited
at https://github.com/cfcrane/SLAG.  This Dryad repository
contains files that were used in preparing a manuscript, "SLAG: A
Program for Seeded Local Assembly of Genes in Complex Genomes", which
has been submitted to Molecular Ecology Resources.  The
repository is divided into sections for scripts, simulated reads, real
reads, and benchmarking against two functionally similar programs, aTRAM2
and SRAssembler.