Degrees of freedom (DF), pseudo F values, and R² from PerMANOVAs for the effect of three cropping systems (perennial monoculture (PM), annual agriculture (AN), and native vegetation (NV)) and two soil depths (0–10 and 10–30 cm) on soil fungal communities.

All consists of the entire fungal community before using FUNguild and the three trophic guilds (Pathotroph, Saprotroph, and Symbiotroph) consist of OTUs categorized as “highly probable” and “probable” by FUNguild. Pairwise comparisons were made among cropping systems across depths for each PerMANOVA (different letters indicate a significant difference (p < 0.05)).