Data_S5

Data S5, SnpEff and the gvcf in Data S1 were used to predict the effect of SNPs and small indels (with “HIGH” or “MODERATE” impact) in the coding sequence of genes located at QTL1 and QTL2 of BSA MR-VL and BSA MAR-AB. SnpSift was subsequenty used to retain only variants where the variant allele was present in the resistant parental strain, absent in the susceptible parental strain and enriched in all selected populations (i.e. allelic depth of variant allele being higher than the allelic depth of the reference allele).