Processed data and workflow scripts for archaeal-centered four-domain gut metagenomics across coronary artery disease and acute myocardial infarction

Processed, de-identified data and workflow scripts supporting the analyses reported in the manuscript “Four-domain gut metagenomics reveals archaeal-centered cross-kingdom remodeling across coronary artery disease and acute myocardial infarction.” The package includes processed abundance/CLR matrices, clinical covariate tables, functional ROI inputs, processed metabolomics feature tables, edge-level network outputs, covariate-adjusted sensitivity outputs, bootstrap/permutation stability outputs, supplementary analysis tables, and workflow scripts. Raw sequencing reads, raw LC–MS files, and individual-level clinical records are not included in the public package and are available through controlled access subject to institutional approval and data-use agreement.