Additional file 8 of Proteogenomic characterization of difficult-to-treat breast cancer with tumor cells enriched through laser microdissection

Additional file 8. Table S1. Subtypes and Gene set enrichment analysis. (A) Contingency table comparing PCA-PAM50 and IHC subtypes. (B) Annotation of the differentially expressed genes between LMD and TCGA LumA samples. (C) Gene Set Enrichment Analyses highlight sets of immune-related pathways significantly down-regulated in LMD LumA tumors.