ProjecTILs human reference atlas of CD8+ tumor-infiltrating T cells (CD8 TIL), version 1

ProjecTILs human reference atlas of CD8+ tumor-infiltrating T cells, generated by semi-supervised STACAS integration of scRNA-seq datasets spanning 7 cancer types.

The dataset is available as a Seurat object, with functional cluster, sample of origin and several other measurement for each cell stored in the object metadata. 

The object can be loaded into an R session using the readRDS() function, and directly used as a reference atlas for ProjecTILs (Andreatta et al. 2021).

Code to reproduce the atlas can be found here:

https://github.com/carmonalab/CD8_human_TIL_atlas_construction