Data sets used in the paper "The Chalcidoidea bush of life – Evolutionary history of a massive radiation of minute wasps" by Cruaud, Rasplus, Zhang, Burks et al. 2023. Cladistics accepted.

Data sets used in the following manuscript :

Cruaud, A., Rasplus, J.-Y., Zhang, J., Burks, R., Delvare, G., Fusu, L., Gumovsky, A., Huber, J.T., Janšta, P., Mitroiu, M.-D., Noyes, J.S., van Noort, S., Baker, A., Böhmová, J., Baur, H., Blaimer, B.B., Brady1, S.G., Bubeníková, K., Chartois, M., Copeland, R.S., Dale-Skey Papilloud, N., Dal Molin, A., Dominguez, C., Gebiola, M., Guerrieri, E., Kresslein, R.L., Krogmann, L., Moriarty Lemmon, E., Murray, E., Nidelet, S., Nieves Aldrey, J.L., Perry, R., Peters, R.S., Polaszek, A., Sauné, L., Torréns, J., Triapitsyn, S., Tselikh, E.V., Yoder, M., Lemmon, A., Woolley, J.B., Heraty, J.M., 2023-inpress. The Chalcidoidea bush of life - Evolutionary history of a massive radiation of minute wasps. Cladistics accepted. DOI: 10.1111/cla.12561

#this repo contains the data sets analysed in our study and associated "partition by locus" files

exons : Exons as nucleotide sequences (414 taxa 1007 loci)
exonsRY : Exons with RY coding of 3rd codon positions (414 taxa    1007 loci)
exonsAA : Exons as amino acid sequences (414 taxa 1007 loci)
UCEs50-25 : UCEs with alignment positions kept only when they are present in at least 50% of the taxa + sequences with more than 25% gaps removed (407 taxa 1048 loci)
UCEs70-25 : UCEs with alignment positions kept only when they are present in at least 70% of the taxa + sequences with more than 25% gaps removed (407 taxa 1048 loci)
UCEs90-25 : UCEs with alignment positions kept only when they are present in at least 90% of the taxa + sequences with more than 25% gaps removed (407 taxa 1048 loci)
UCEs90-25_1locusRemovedForCombWithExonsAA.phy : UCEs90-25 with locus shared among the exons and the UCE data sets removed (407 taxa 1047 loci)
combined : exonsAA + UCEs90-25  (433 taxa 2054 loci)
AHE520 : subdirectory that includes the AHE520RY and AHE520AA data sets (520 taxa 989 loci); see SI mat met