Supplemental Material for Mok et al., 2020

Supplemental figures, tables, and data accompanying Mok <i>et al.</i> manuscript "PhenoMIP: High-Throughput Phenotyping of Diverse <i>C. elegans </i>Populations via Molecular Inversion Probes"<br>Figure S1 contains abundance and read depth data for MIP library sequencing data from false positive datasets. <br>Figure S2 contains an analysis of read depth data for probe representation and read depth distribution from false positive datasets. <br>Figure S3 contains principal component analysis of pool M11 replicates after subdividing into sets by food source. <br>Figure S4 contains principal component analysis of pool M11 replicates after subdividing into sets by generation. <br>Figure S5 contains violin plots of mean FCR across all strains, separated by fitness class. <br>Figure S6 contains fold-change analysis by food source from MMP strain data. <br>Figure S7 contains an analysis of mean FCR for strains across all datasets and of control strain (VC20019) mean FCR across multiple experiments. <br>Figure S8 contains MIP-MAP data for class 0 and class 1 strains. <br>File SD1 contains sequence information for all MIPs designed for 2007 MMP strains and 40 wild isolates of <i>C. elegans</i>. <br>File SD2 contains MIP abundance and read data used in the analysis of false positive sequencing data. <br>File SD3 contains the mean fold-change rate data for all MMP strains across pooling experiments presented in this manuscript. <br>File SD4 contains mean fold-change rate data for all replicates of the wild isolate strains across the RNAi experiments as well as variant data for ED3052 mapped interval associated with <i>emb-27</i> RNAi suppression. <br>File SD5 contains all sequencing read counts and strain mean abundance data derived from MIP analysis for the pooling experiments presented within the manuscript.