Histone demethylation and c-MYC activation enhance translational capacity in response to amino acid restriction [ChIP-seq]

Nutrient limitation may elicit adaptive epigenetic changes but the nature and mechanisms of the cellular response to specific nutrient deficiencies are incompletely understood. We report that depriving human cells of amino acids (AAs) induces specific loss of H4K20me1 from gene bodies and elevated binding of c-MYC at promoters genome-wide. These effects are most pronounced at ribosomal protein and translation initiation genes, which are upregulated, leading to enhanced protein synthetic capacity. Combination of H4K20 methyltransferase depletion and c-MYC over-expression in rich media is required and sufficient to recapitulate the effects of AA restriction. Our data reveal an unexpected and epigenetically implemented increase in translational capacity when AAs are limiting, likely to safeguard the proteome by making effective use of limited resources. Examine the enrichment of H4K20me1,H3K36me3, H4K20me3, cMYC, and RNA Pol II in HeLa cells cultured in complete DMEM medium or in DMEM lacking amino acids by ChIP-seq analysis.