SSU rRNA sequencing data for bacterial communities of the mucosa and the gut contents of rainbow trout on a high-carbohydrate and high-protein diet

The aim of this study was to identify differences in the allochthonous and autochthonous microflora of the hind and fore intestines of rainbow trout on high-carbohydrate and high-protein diets. Samples were taken from the contents of the hindgut and foregut, as well as scrapings of the epithelium of the hindgut and foregut.