Dataset of detected, built and improved tryptophan mannosylation in glycoprotein structures

Dataset corresponding to the work described in paper "Methods for detecting, building and improving tryptophan mannosylation in glycoprotein structures", Holland L., Pham T.P. et al Protein Science Tools (2024).

Included are pdb and mmcif files constaining the structures where we modelled unmodelled C-mannosylation (named pdbcode_grafted.pdb/mmcif), pdb and mmcif files containing the structures where we fixed distorted or incorrect C-mannose residues (named pdbcode_fixed.pdb/mmcif), and the mtz files for the X-ray crystal structures. Also included are restraint files for the glycans, to be used with servalcat/refmac5 in order to preserve the glycan conformation and linkage when refining. These files are sorted into folders for X-ray crystal structures and for Cryo-EM structures.

Finally, the code used to produce these results (privateer) is included in the version it was when the data was collected.