five

Gadus morhua Transcriptome Assembly. Gadus morhua breed:Norway

收藏
NIAID Data Ecosystem2026-03-11 收录
下载链接:
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA625442
下载链接
链接失效反馈
官方服务:
资源简介:
The Gadus morhua assembly consists of sequences assembled from the following RNASeq data:developmental stages 10-dph,20-dph,30-dph,45-dph,60-dph,90-dphNCBI project : PRJNA277848 https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA277848RNASeq from tissuesSRR2045416 brain ,SRR2045417 gills, SRR2045418 heart, SRR2045419 muscle, SRR2045420 liver, SRR2045421 kidney, SRR2045422 bones, SRR2045423 intestine, SRR2045425 embryo, SRR2045415 ovary3 liver samples from Atlantic cod (dcod_12_S3, dcod_1_S1, dcod_25_S25)https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE106968Reads were assembled using Trinity through the Agalma pipline version 0.5.0Dunn, C.W., Howison, M. & Zapata, F. Agalma: an automated phylogenomics workflow. BMC Bioinformatics 14, 330 (2013). https://doi.org/10.1186/1471-2105-14-330All assembled sequences were mapped towards the gene models from the genome assemblies Gadmor 1.0 (http://www.ensembl.org/Gadus_morhua/Info/Index) and Gadmor 2.0. (PMID: 28100185) using Blat version 35The sequence with the best match against genes in both of the gene models were kept, making this assembly more complete in number of genes compared to the gene models from the 2 genome assemblies
创建时间:
2020-04-15
5,000+
优质数据集
54 个
任务类型
进入经典数据集
二维码
社区交流群

面向社区/商业的数据集话题

二维码
科研交流群

面向高校/科研机构的开源数据集话题

数据驱动未来

携手共赢发展

商业合作