multimolecule/rnacentral-modifications

---
language: rna
tags:
- Biology
- RNA
license:
- agpl-3.0
size_categories:
- 10M<n<100M
source_datasets:
- multimolecule/5srrnadb
- multimolecule/crw
- multimolecule/dictybase
- multimolecule/ena
- multimolecule/ensembl
- multimolecule/ensembl_fungi
- multimolecule/ensembl_gencode
- multimolecule/ensembl_metazoa
- multimolecule/ensembl_plants
- multimolecule/ensembl_protists
- multimolecule/evlncrnas
- multimolecule/expression_atlas
- multimolecule/flybase
- multimolecule/genecards
- multimolecule/greengenes
- multimolecule/gtrnadb
- multimolecule/hgnc
- multimolecule/intact
- multimolecule/lncbase
- multimolecule/lncbook
- multimolecule/lncipedia
- multimolecule/lncrnadb
- multimolecule/malacards
- multimolecule/mgi
- multimolecule/mgnify
- multimolecule/mirbase
- multimolecule/mirgenedb
- multimolecule/modomics
- multimolecule/noncode
- multimolecule/pdbe
- multimolecule/pirbase
- multimolecule/plncdb
- multimolecule/pombase
- multimolecule/psicquic
- multimolecule/rdp
- multimolecule/refseq
- multimolecule/rfam
- multimolecule/rgd
- multimolecule/ribocentre
- multimolecule/ribovision
- multimolecule/sgd
- multimolecule/silva
- multimolecule/snodb
- multimolecule/snopy
- multimolecule/snorna_database
- multimolecule/srpdb
- multimolecule/tair
- multimolecule/tarbase
- multimolecule/tmrna_website
- multimolecule/wormbase
- multimolecule/zfin
- multimolecule/zwd
task_categories:
- text-generation
- fill-mask
task_ids:
- language-modeling
- masked-language-modeling
pretty_name: RNAcentral
library_name: multimolecule
---

# RNAcentral


RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of [Expert Databases](https://rnacentral.org/expert-databases) representing a broad range of organisms and RNA types.

The development of RNAcentral is coordinated by [European Bioinformatics Institute](http://www.ebi.ac.uk/) and is supported by [Wellcome](https://wellcome.ac.uk/). Initial funding was provided by [BBSRC](https://bbsrc.ukri.org/).

## Disclaimer

This is an UNOFFICIAL release of the [RNAcentral](https://rnacentral.org) by The RNAcentral Consortium.

**The team releasing RNAcentral did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.**

## Dataset Description

- **Homepage**: https://rnacentral.org
- **Documentation**: https://multimolecule.danling.org/datasets/rnacentral
- **datasets**: https://huggingface.co/datasets/multimolecule/rnacentral
- **Point of Contact**: [Blake Sweeney](https://www.ebi.ac.uk/people/person/blake-sweeney/)

## Derived Datasets

- [rnacentral-modifications](https://huggingface.co/datasets/multimolecule/rnacentral-modifications): RNAcentral dataset with modifications.

## License

This dataset is licensed under the [AGPL-3.0 License](https://www.gnu.org/licenses/agpl-3.0.html).

```spdx
SPDX-License-Identifier: AGPL-3.0-or-later
```

> [!TIP]
> The original RNAcentral dataset is licensed under the CC0 1.0 Universal (CC0 1.0) Public Domain Dedication.
> This dataset is a derivative of the original RNAcentral dataset and uses a different license.

## Citation

```bibtex
@article{rnacentral2021,
author = {{RNAcentral Consortium}},
doi = {https://doi.org/10.1093/nar/gkaa921},
journal = {Nucleic Acids Research},
month = jan,
number = {D1},
pages = {D212--D220},
publisher = {Oxford University Press (OUP)},
title = {{RNAcentral} 2021: secondary structure integration, improved sequence search and new member databases},
url = {https://academic.oup.com/nar/article/49/D1/D212/5940500},
volume = 49,
year = 2021
}

@article{sweeney2020exploring,
author = {Sweeney, Blake A. and Tagmazian, Arina A. and Ribas, Carlos E. and Finn, Robert D. and Bateman, Alex and Petrov, Anton I.},
doi = {https://doi.org/10.1002/cpbi.104},
eprint = {https://currentprotocols.onlinelibrary.wiley.com/doi/pdf/10.1002/cpbi.104},
journal = {Current Protocols in Bioinformatics},
keywords = {Galaxy, ncRNA, non-coding RNA, RNAcentral, RNA-seq},
number = {1},
pages = {e104},
title = {Exploring Non-Coding RNAs in RNAcentral},
url = {https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.104},
volume = 71,
year = 2020
}

@article{rnacentral2019,
author = {{The RNAcentral Consortium}},
doi = {https://doi.org/10.1093/nar/gky1034},
journal = {Nucleic Acids Research},
month = jan,
number = {D1},
pages = {D221--D229},
publisher = {Oxford University Press (OUP)},
title = {{RNAcentral}: a hub of information for non-coding {RNA} sequences},
url = {https://academic.oup.com/nar/article/47/D1/D221/5160993},
volume = 47,
year = 2019
}

@article{rnacentral2017,
author = {{The RNAcentral Consortium} and Petrov, Anton I and Kay, Simon J E and Kalvari, Ioanna and Howe, Kevin L and Gray, Kristian A and Bruford, Elspeth A and Kersey, Paul J and Cochrane, Guy and Finn, Robert D and Bateman, Alex and Kozomara, Ana and Griffiths-Jones, Sam and Frankish, Adam and Zwieb, Christian W and Lau, Britney Y and Williams, Kelly P and Chan, Patricia Pand Lowe, Todd M and Cannone, Jamie J and Gutell, Robin and Machnicka, Magdalena A and Bujnicki, Janusz M and Yoshihama, Maki and Kenmochi, Naoya and Chai, Benli and Cole, James R and Szymanski, Maciej and Karlowski, Wojciech M and Wood, Valerie and Huala, Eva and Berardini, Tanya Z and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Paraskevopoulou, Maria D and Vlachos, Ioannis S and Hatzigeorgiou, Artemis G and Ma, Lina and Zhang, Zhang and Puetz, Joern and Stadler, Peter F and McDonald, Daniel and Basu, Siddhartha and Fey, Petra and Engel, Stacia R and Cherry, J Michael and Volders, Pieter-Jan and Mestdagh, Pieter and Wower, Jacek and Clark, Michael B and Quek, Xiu Cheng and Dinger, Marcel E},
doi = {https://doi.org/10.1093/nar/gkw1008},
journal = {Nucleic Acids Research},
month = jan,
number = {D1},
pages = {D128--D134},
publisher = {Oxford University Press (OUP)},
title = {{RNAcentral}: a comprehensive database of non-coding {RNA} sequences},
url = {https://academic.oup.com/nar/article/45/D1/D128/2333921},
volume = 45,
year = 2017
}

@article{rnacentral2015,
author = {{RNAcentral Consortium} and Petrov, Anton I and Kay, Simon J E and Gibson, Richard and Kulesha, Eugene and Staines, Dan and Bruford, Elspeth A and Wright, Mathew W and Burge, Sarah and Finn, Robert D and Kersey, Paul J and Cochrane, Guy and Bateman, Alex and Griffiths-Jones, Sam and Harrow, Jennifer and Chan, Patricia P and Lowe, Todd M and Zwieb, Christian W and Wower, Jacek and Williams, Kelly P and Hudson, Corey M and Gutell, Robin and Clark, Michael B and Dinger, Marcel and Quek, Xiu Cheng and Bujnicki, Janusz M and Chua, Nam-Hai and Liu, Jun and Wang, Huan and Skogerb{\o}, Geir and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Cole, James R and Chai, Benli and Huang, Hsien-Da and Huang, His-Yuan and Cherry, J Michael and Hatzigeorgiou, Artemis and Pruitt, Kim D},
doi = {https://doi.org/10.1093/nar/gku991},
journal = {Nucleic Acids Research},
month = jan,
number = {Database issue},
pages = {D123--D129},
title = {{RNAcentral}: an international database of {ncRNA} sequences},
url = {https://academic.oup.com/nar/article/43/D1/D123/2439941},
volume = 43,
year = 2015
}

@article{bateman2011rnacentral,
author = {Bateman, Alex and Agrawal, Shipra and Birney, Ewan and Bruford, Elspeth A and Bujnicki, Janusz M and Cochrane, Guy and Cole, James R and Dinger, Marcel E and Enright, Anton J and Gardner, Paul P and Gautheret, Daniel and Griffiths-Jones, Sam and Harrow, Jen and Herrero, Javier and Holmes, Ian H and Huang, Hsien-Da and Kelly, Krystyna A and Kersey, Paul and Kozomara, Ana and Lowe, Todd M and Marz, Manja and Moxon, Simon andPruitt, Kim D and Samuelsson, Tore and Stadler, Peter F and Vilella, Albert J and Vogel, Jan-Hinnerk and Williams, Kelly P and Wright, Mathew W and Zwieb, Christian},
doi = {https://doi.org/10.1261/rna.2750811},
journal = {RNA},
month = nov,
number = 11,
pages = {1941--1946},
publisher = {Cold Spring Harbor Laboratory},
title = {{RNAcentral}: A vision for an international database of {RNA} sequences},
url = {https://rnajournal.cshlp.org/content/17/11/1941.long},
volume = 17,
year = 2011
}
```