II.4 - Agrogenom first integration of reconciliation scenarios

10,774 annotated gene trees in phyloXML and serialized Python oblect (pickle) formats, and associated database records describing the duplication and transfer events inferred in these reconciled gene trees.<br>Obtained using Python script rec_to_db.py from pre-reconciled gene trees (see item #II.2) and the results of Prunier HGT inference on unicopy subtrees (see item #II.3). <br>Prunier-inferred transfers are mapped back to the full gene tree, and reconciliations are completed using taxonomic incongruency scoring and DL parsimony to assign transfer or duplication events to the relevant nodes