Data for Sun et al. 2024: <b>GNN codon adjacency regulates protein translation</b>

Source files for Sun et al. 2024 <b>GNN codon adjacency regulates protein translation.</b><b>ORF_sequence_analysis</b> <b>folder</b>:orf_nt_freq_yeast.ipynborf_nt_freq_cross_species.ipynbweight_matrix_bootstrap (folder)<b>Ribosome_profiling_data_code</b> <b>folder</b>:Sun_et_al_ribo_profile_code.py21_nt_footprint_data.xlsx28_nt_footprint_data.xlsxfootprint_collation.xlsxprofile_files_and_code (folder)<b>MD experiment restart structure and topology files in</b><b> </b><b>folders</b>:<b>UG, AG, CG, UC, CC_G34, GG_I34, UU</b> (folder names show nucleotides 1 and 2 of A-site codon)<b>MD_analysis </b><b>folder</b>:Sun_et_al_MD_code.pdfSun_et_al_H-bond_data.xlsxSun_et_al_stacking_data (folder)<br>