Tree-for-three-rumen-ciliates-FigShare.rar

README.txtFiles Description1) MRO-gene-trees:Phylogenetic trees of putative MRO genes of three rumen ciliates. For each gene, the homologs were obtained as described in the main text, and then tree was reconstructed by using FastTree (2.1.10) and saved in phyloxml format. The trees were named in “*.phyloxml”. On the tree, tips were annotated with an in house perl script. The trees of the three rumen ciliates were saved into three separate file folders: a) Entodinium furca-MRO, FastTree output tree in phyloxml formatb) Diplodinium dentatum-MRO, FastTree output tree in phyloxml formatc) Isotricha intestinalis-MRO, FastTree output tree in phyloxml format 2) HGT-gene-trees: Phylogeneitc trees of characterized horizontal transferred gene of three rumen ciliates. Tree was constructed by using FastTree (2.1.10)and PhyML, and saved in newick format. The trees were named in “*.nwk”.The trees of the three rumen ciliates were saved into three separate file folders, which include two subfolders(FasTree-tree and PhyML-tree):a) Efurca-HGT-NWKb) Ddentatum-HGT-NWKc) Iintestinalis-HGT-NWK