Loss of SMARCA4 Reprograms Chromatin Accessibility Contributing to Urothelial Dedifferentiation and Metastatic Progression of Bladder Cancer

This repository contains processed data supporting the manuscript that are neither deposited in GEO nor included as supplementary material. Raw RNA-seq data generated in this study are available at GEO (accession: GSE327561). Current contents include: (1) Ingenuity Pathway Analysis (IPA) upstream regulator analysis of 1,024 differentially expressed genes (DEGs) and 6,175 differential open chromatin regions (DORs) with candidate regulatory targets, and (2) normalized RNA-seq expression table (TPM) for HUC, four non-metastatic (TCCSUP, RT112, RT4, and T24), and seven metastatic samples (T24T, SLT3, FLT3, UMUC3, LUL2, 253J, BV and PDX).