Datasets for high resolution spatial mapping of mouse hippocampus (Slide-seqV2) for SC2Spa

AdataMH1.h5ad<br> 70.08 MB<br> AMB_HC.h5ad<br> 319.24 MB<br> Manage<br> needed to publish<br> Title<br> Datasets for high resolution spatial mapping of mouse hippocampus (Slide-seqV2) for SC2Spa<br> Authors<br> Linbu Liao<br> Categories<br> Bioinformatic methods development<br> Item type<br> dataset<br> Keyword(s)<br> Spatial transcriptomics <br> AdataMH1.h5ad is the processed mouse hippocampus spatial transcriptomics data file of puck_200115_08 from Slide-seqV2 paper[1]. AMB_HC.h5ad is a processed mouse hippocampus scRNA-seq data file[2]. The datasets are saved in Anndata format. ssHippo_RCTD.csv is the annotation for the AdataMH1.h5ad file by RCTD[3]. The datasets were used for the spatial mapping of SC2Spa. <br> Ref [1] Stickels RR, Murray E, Kumar P, Li J, Marshall JL, Di Bella DJ, Arlotta P, Macosko EZ, Chen F: <strong>Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2.</strong> <em>Nature Biotechnology</em> 2020. [2] Saunders A, Macosko EZ, Wysoker A, Goldman M, Krienen FM, de Rivera H, Bien E, Baum M, Bortolin L, Wang SY, et al: <strong>Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.</strong> <em>Cell</em> 2018, <strong>174:</strong>1015-+. [3] Cable DM, Murray E, Zou LS, Goeva A, Macosko EZ, Chen F, Irizarry RA: Robust decomposition of cell type mixtures in spatial transcriptomics. Nat Biotechnol 2021. <br>