Supplementary data Common chaffinch genome assembly

Supplementary data from Chromosome-level genome assembly of the common chaffinch (Aves:Fringilla coelebs): a valuable resource for evolutionary biology.We include the common chaffinch (Fringilla coelebs) genome assembly, as well as the supplementary methods, figures, tables and files described in the article.Supplementary Materials Supplementary Methods:-Sequencing and genome assembly pipeline.-Assembly quality control.-Gene annotation and function prediction.-Non-coding RNA prediction and identification.TableS1. Assembly quality statistics TableS2. Classification of repeats of the common chaffinch assembly. Figure S1. Screen for possible contamination using BlobTools.Figure S2. Distribution of microsatellites motif lengths.Figure S3. Microsatellite count and sequence length correlation. Supplementary Files: File S1. Microsatellites: -Microsatellites and their genomic position. -Length distribution of microsatellites. -Frequency of occurrence of microsatellites on every scaffold. File S2. Genome annotation in general feature format. File S3. Information table about predicted genes with SwissProt, the Zebra finch genome, InterPro and GO terms. File S4. Predicted output of tRNA-SE scan. File S5. Sequence and structure of tRNAs. File S6. Predicted ncRNA types.Protein fasta fileCds fasta file