Comparison of the identified genomic regions under putative selection with those identified by meta-assembly of selection signatures.

Note: BTA, Bos taurus autosome; Breed: YRSL, Yaroslavl; KHLM, Kholmogor; HOL, Holsteins; genomic regions: start and end positions (Mbp) according to Bos_taurus_UMD_3.1.1 genome assembly (https://www.ncbi.nlm.nih.gov/assembly/GCF_000003055.6); methods used for the identification of the signature of selection: FST, top 0.1% SNPs by FST value at pair-wise breed comparison; hapFLK, regions identified by hapFLK analysis; ROH50, ROH segments distributed in more than 50% of animals within each of the studied breed; 1present study; 2Yurchenko et al. [34]; 3meta-assembly of selection signatures, performed by Randhawa et al. [58]: overlapped MSS region (Mb)–overlapped genomic regions, which were validated by meta-selection scores; pairs of breeds, used for FST calculations: aKHLM/HOL, bYRSL/HOL, cYRSL/KHLM; dweak selection signal was also observed in Kholmogor breed. (XLSX)