Annotations of human skin-associated fungi

Description This repository contains genome annotations for skin-associated fungi sequenced and analysed in the manuscript:Comparative Genomic Analysis of Clinically Relevant Human Skin-Associated Fungi, S. Agerbaek et al., https://doi.org/10.21203/rs.3.rs-6700810/v1 (under review) The data provided here represent the original genome assemblies and annotations generated prior to any downstream processing, and are deposited to ensure full reproducibility of the results reported in the study. Clean assemblies and raw reads are available under the Bioproject: PRJNA126044, which also contains metadata about the strains sequenced. Note that some genomes were excluded from the analysis following the initial upload, which is why there are fewer annotations here than assemblies in the Bioproject. Annotations available in this repo under Annotations/species_ID were annotated with Funannotate v1.8.13. Functional annotations were generated with Eggnog-mapper v2.1.7, InterProScan v5.56-89.0, antiSMASH v6.0.0 and SignalP v6.0. Content For each genome, the following files are provided: .scaffolds.fa Initial assembly .gff3 Structural gene annotation including gene, transcript, and CDS features .proteins.fa Predicted protein sequences .rn.proteins.fasta Predicted protein sequences with re-named fasta headers containing functional annotation in the format: >Species | Strain_ID | Gene accession | Gene name | Gene description | COG | Antismash | GO term | EC number(s) | Pfam term(s) | Interpro term(s) .cds-transcripts.fa Nucleotide coding sequences .annotations.txt Functional annotation summary table .stats.json Assembly and annotation statistics generated during the annotation process For questions regarding these data, please contact: Sofie Agerbaek, [e-mail]