Additions to AGORA2 made for Shaaban et al, "Personalized modeling of gut microbiome metabolism throughout the first year of life"

This dataset contains expansions made to AGORA2 (https://www.nature.com/articles/s41587-022-01628-0) and published in Shaaban et al, "Personalized modeling of gut microbiome metabolism throughout the first year of life", in press. Included are: 289 additional genome-scale reconstructions built for genomes not included in AGORA2 250 genome-scale reconstructions from AGORA2 endapnded with human milk oligosaccharide degradation pathways In this version, slight updates have been made to the 289 additional genome-scale reconstructions based on additional experimental data.