Nanopore Enterobacterales assembly comparison supplementary data files

Supplementary data files for "Nanopore long-read only genome assembly of clinical Enterobacterales isolates is complete and accurate" (Nagy et al.):· ENA Sample accessions and sample metadata (accessions_and_metadata.csv)· Seqkit stats summaries of the Illumina and Nanopore reads (raw_qc_sup.cav)· Summary of assembly contig features (contigs_summary_sup_cleaned.csv)· Pairwise mash distances between contigs (mash_cleaned.csv)· Plasmids matching across different assemblers compared to the Hybracter (hybrid) and manually-curated reference sets (plasmids_match_hybracter_mash.csv; plasmids_match_manual_mash.csv, respectively)· Seven-locus multi-locus sequence type annotation (mlst_cleaned.csv)· CheckM2 summaries of assemblies (checkm2_cleaned.csv)· Nucleotide-level accuracy of assemblies (SNP, Indels, and Quality value compared to short-read mapping)(assembly_nucleotide_accuracy_cleaned.csv)· Bakta annotation (bakta_by_contig_cleaned.csv)· AMRFinderPlus annotations of contigs (amrfinder_plus_cleaned.csv)· MOB-suite annotation summaries of contigs (mobsuite_cleaned.csv)