Data supplement to "Domestication Reshaped the Genetic Basis of Inbreeding Depression in a Maize Landrace Compared to its Wild Relative, Teosinte"

Data files and scripts used for analysis of this paper.<br>ReadMe.txt Overall description of files and folders in this data supplement, including explanation of data file columns<br><br>Data files:49parents_KNNi_40255.hmp.txt Genoptype calls at 40255 SNPs, missing data imputed with KNNi. Hapmap file format<br>Landraces_FL1314_all_data_updated_4398taxa_Fest_2_ed.csv Trait data file for maize Tuxpeno population<br>Landraces_FL1314_all_data_updated_4398taxa_for_diallel.csv Trait data file for maize Tuxpeno population, formatted for diallel asreml script<br>parentcalls_itr2_Combined_LR13_LR14_parents2_AGPv4_filter0219.hmp.txt.gz hplotype calls for maize parents and progeny<br>parentcalls_ZeaGBSv27raw_RareAllelesC2TeoCurated_depth_AGPv4_filtered0210_rnd2.hmp.txt Haplotype calls for teosinte parents and progeny<br>Readme (parentcalls_Info).txt Text file explaining the A,C,G, and T codes used in the haplotype call files. These are NOT base pair calls, they are codes for which parental haplotypes are inherited at each SNP.<br>teo_genetic_map.csv Linkage map of teosinte population<br>teo_imp_02102017_traits-2 Trait data file for teosinte population<br>teosinte_pheno_cov_pc20190426_ed.txt <br><br>xo_Combined_LR13_LR14_parents2_AGPv4_filter0219.txt Text file containing inferred position of crossovers within each maize progeny<br>xo_ZeaGBSv27raw_RareAllelesC2TeoCurated_depth_AGPv4_filtered0210<br>Text file containing inferred position of crossovers within each teosinte progeny<br>teo_imp_02102017_traits-2.csv Trait data file for teosinte population<br>Zipped folders containing data analysis scripts:<br>Scripts_data_for_diallel.zip<br>Scripts_for_Inbreeding_Depression_Summary_and_Figures.zip<br>Scripts_for_rare_allele_scan_maize.zip<br>Scripts_for_rare_allele_scan_teo.zip<br>Scripts_for_regression_on_F.zip<br><br>Supplemental_Figures.zip<br>see "List of Supplemental Figures.docx" contained in this zipped archive for description of files.<br>Supplemental_Tables.zipsee "Maize Teosinte Inbreeding Depression List of Supplemental Tables.docx" contained in this zipped archive for description of files.<br> <br><br><br>