Supplementary_Tables_Scheben_et_al_2020

These supplementary tables are data associated with the preprint: Armin Scheben, Olivia Mendivil Ramos, Melissa Kramer, Sara Goodwin, Sara Oppenheim, Daniel Becker, Michael C Schatz, Nancy B Simmons, Adam Siepel, W Richard McCombie. 2020. Unraveling molecular mechanisms of immunity and cancer-resistance using the genomes of the Neotropical bats Artibeus jamaicensis and Pteronotus mesomericanus. bioRxiv.Table legendsTable S4. Recent accumulations of transposable elements identified by RepeatMasker in six noctilionid reference genomes. Base pairs counted are from non-overlapping elements with Table S5. Number of confident (Table S6. Number of confident (Table S7. BLASTX alignment results (Table S8. BLASTX alignment results (Table S9. Table S9. Positively selected genes in the bat ancestor. Raw and within-gene FDR-corrected p-values are provided for the HyPhy aBS-REL test as well as the likelihood ratio test for PAML Test 2 and the null hypothesis Test 2 fixed. Two phylogenetic trees are used, with alternative relationships between laurasiatherian mammals: Tree 1 (Chiroptera + Perissodactyla are sister to the Carnivora + Cetartiodactyla) and Tree 2 (bats as the sister group to a the clade (Cetartiodactyla+Perissodactyla) + Carnivora). Functional groups are defined based on GO annotations for the categories immunity, DNA repair, telomere maintenance, aging, reproduction, thermoregulation, hearing and digestion; genes not belonging to these categories are classified as NA.