Additional file 1 of The chromosome-level wintersweet (Chimonanthus praecox) genome provides insights into floral scent biosynthesis and flowering in winter

Additional file 1: Table S1. Summary of sequencing data of Chimonanthus praecox and Calycanthus chinensis genome. Table S2. Estimation of genome size of Chimonanthus praecox and Calycanthus chinensis using K-mer analysis. Table S3. Statistic of Chimonanthus praecox and Calycanthus chinensis genome assembly. Table S4. Chromosomes length of wintersweet using HiC reads. Table S5. Assembly results of wintersweet using Hi-C. Table S6. Validation of genome assembly using BUSCO and CEGMA method. Table S7. Statistics of predicted protein-coding genes in Chimonanthus praecox and Calycanthus chinensis genome. Table S8. Functional annotation of the wintersweet protein-coding genes. Table S9. Annotation of conserved non-coding RNA genes in the wintersweet genome. Table S10. Wintersweet-specific gene families. Table S11. The list of expansion genes in wintersweet genome. Table S12. Annotation of repeat sequences in the wintersweet genome. Table S13. List of flowering-time and floral organ identity gene candidates in wintersweet. Table S14. The upregulated expressed genes involved in flowering networks in FBS1 stage compared with FBS2 stage. Table S15. Monthly temperatures in Wuhan (March 2017–February 2018). Table S16. Differently expressed genes between FBS6 and FBS7 stage. Table S17. List of Heat stress transcription factors (Hsf) and DEHYDRATION- RESPONSIVE ELEMENT BINDING PROTEIN (DREB) gene candidates identified in the wintersweet genome. Table S18.The candidate genes involved in the terpene synthesis pathways in wintersweet. Table S19. Terpene synthase family in wintersweet. Table S20. The candidate genes involved in the benzenoid/ phenylpropanoid synthesis pathways in wintersweet. Table S21. The list of transcription factor candidates involved in the regulation of VOCs synthesis in wintersweet. Table S22. Primers for CpTPS genes coloning and MADS-box B&C class genes Real-Time PCR. Table S23. Transporter candidates involved in benzenoid/phenylpropanoid synthesis pathways in wintersweet genome. Table S24. Tandem duplicated gene clusters in wintersweet genome.

附加文件1：
表S1 蜡梅（Chimonanthus praecox）与夏蜡梅（Calycanthus chinensis）基因组测序数据汇总
表S2 基于K-mer分析（K-mer analysis）的蜡梅与夏蜡梅基因组大小评估
表S3 蜡梅与夏蜡梅基因组组装统计
表S4 基于Hi-C测序读段（HiC reads）的蜡梅染色体长度统计
表S5 基于Hi-C的蜡梅基因组组装结果
表S6 采用BUSCO与CEGMA方法验证的蜡梅基因组组装质量
表S7 蜡梅与夏蜡梅基因组预测蛋白编码基因统计
表S8 蜡梅蛋白编码基因功能注释
表S9 蜡梅基因组保守非编码RNA基因注释
表S10 蜡梅特异性基因家族
表S11 蜡梅基因组中扩张基因列表
表S12 蜡梅基因组重复序列注释
表S13 蜡梅开花时间与花器官特征候选基因列表
表S14 相较于FBS2时期，FBS1时期开花调控网络中上调表达的基因
表S15 2017年3月—2018年2月武汉月度气温统计
表S16 FBS6与FBS7时期的差异表达基因
表S17 蜡梅基因组中鉴定的热激转录因子（Heat stress transcription factors, Hsf）与脱水应答元件结合蛋白（DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN, DREB）候选基因列表
表S18 蜡梅萜类合成通路候选基因
表S19 蜡梅萜合酶家族
表S20 蜡梅苯类/苯丙烷类合成通路候选基因
表S21 参与调控蜡梅挥发性有机化合物（VOCs）合成的转录因子候选列表
表S22 CpTPS基因克隆与MADS-box B、C类基因实时荧光定量PCR（Real-Time PCR）引物序列
表S23 蜡梅基因组中参与苯类/苯丙烷类合成通路的转运蛋白候选基因
表S24 蜡梅基因组串联重复基因簇