Phylogenies of CCapSV, DImmSV and PAegRV
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https://figshare.com/articles/dataset/Phylogenies_of_CCapSV_DImmSV_and_PAegRV/3437723
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Phylogenies of CCapSV, DImmSV and PAegRV were inferred in MrBayes (v3.2.5). A general time reversible model with gamma distributed rate variation and a proportion of invariable sites was used, with parameters estimated from the data during the analysis. A site-specific rate model was used, that allowed each codon position to have its own rate. Models were run for 1 million MCMC generations, with trees being sampled every 1000 generations. The first 25 per cent of the trees were discarded to ensure that the chains had reached stationarity, and a consensus tree was created from the remaining trees. Trees are midpoint rooted.
提供机构:
figshare
创建时间:
2016-06-15



