Reference transcriptome
收藏DataONE2018-06-25 更新2024-06-08 收录
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Assemblage of the 26 new libraries was done using Trinity with default settings (Haas et al. 2013). A reference transcriptome was constructed using the transcriptome assembly of each of the 26 samples and 13 previously published transcriptomic samples and multireads assembly (an assembly constructed joining the reads of 13 libraries) of Giorello et al. (2014), using custom python scripts. For the construction of the reference transcriptome, we select the best hit between the contigs, among the 39 assembled transcriptomes, and the OMA browser mouse proteins (september 2014 database) (Altenhoff et al. 2011). The alignment was carried out using BLASTX (e-value cut offs < 1e-10).
创建时间：
2018-06-25
