Anvi

While multiple bioinformatics software are already available to generate and/or visualize pangenomes, interfaces do not necessary offer flexible analysis performances, limiting the user's capabilities interacting with their data. We recently have introduced a software platform, anvi'o, to bridge some of the gaps in our common bioinformatics toolkit. We are happy to announce that anvi'o can now process, visualize and manipulate pangenomic data in a user-friendly environment. Some modules are still under construction for a fully automatized workflow. Nevertheless, the current anvi'o interface already offers novel opportunities to combine pangenomes with a variety of contextual metadata and exports high-quality figures for publications. This blog describes original pangenomic investigations of publically available genomic collections. It is set to introduce the anvi'o pangenomic workflow to our enthusiastic users community.