Statistical code (.rmd files) for "Genetic diversity and population structure of parasite infrapopulations within and across hosts for two trophically transmitted trematode parasites" submitted to PeerJ October 2024

R markdown files:
Abundance_Diversity_Models_PeerJ.rmd. This file contains the statistical code for analysis of the parasite infection abundance data and the genetic diversity data.
Haplotypes_ShannonDiversity_PeerJ.rmd. This file contains the statistical code for calculating and analysis of the parasite haplotype frequency, diversity, and Shannon-Weiner diversity of parasite assemblages.
Rarefaction_PeerJ.rmd. This file contains the statistical code for construction of haplotype rarefaction curves using data obtained from EstimateS rarefaction analysis.