Readable trees (.tre) corresponding to paper figures as follows: RAxML_concat--Figure 2; BEAST--Figure 3; RAxML_presabs, RAxML_SNP, and NJst--Figure S3; RAxML_PartitionX--Figure S4.
The concatenated amino acid sequences were used to create a neighbor-joining tree using TREE-PUZZLE program with the Dayhoff model. The divergence time between species was estimated using r8s software