five

Pathways-K_numbers_contigs-ID

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DataONE2015-09-09 更新2024-06-27 收录
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This is a text file containing all the pathways reconstructed in KEGG automatic annotation server from this RNA-seq study. All the pathways and the K-numbers (each K number represents an ortholog group of genes, and it is directly linked to an object in the KEGG pathway map or the BRITE functional hierarchy) along with contigs-id associated with corresponding K-number are presented in one file. One can search specific pathways of interest and can note the K numbers and contigs-id therein. There after, these contigs-id can be interrogated in blast2go.dat file to obtain fasta sequences of gene/set of genes from the pathway of interest (in order to design primers or other purpose).
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2015-09-09
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