Additional file 1 of Population genomic analysis provides evidence of the past success and future potential of South China tiger captive conservation

Additional file 1: Table S1. Sample characteristics and genome sequencing information before and after filtering. Table S2. Sequencing data statistics. Table S3. 17-mer statistic information. Table S4. Genome assembly information. Table S5. Sizes of individual chromosomes. Table S6. Assessment of completeness of the South China tiger genome assembly. Table S7. Summary of repeat contents. Table S8. Statistics of gene structure prediction. Table S9. Result of gene functional annotation. Table S10. Summary of non-coding RNA in genome. Table S11. Sampling information included in the analyses. Table S12. Re-sequencing data statistics in this study. Table S13. Genome mapping and coverage information for all accessions analyzed in this study. Table S14. Number and distribution of SNPs in each genome. Table S15. Distribution of whole-genome SNPs in different subspecies/species. Table S16. Average genome-wide nucleotide diversity in six tiger subspecies. Table S17. Pairwise FST values between six tiger subspecies. Table S18. ABBA-BABA estimates. Only results with |Z score| > 3 were remained. Table S19. f4-ratio calculated between individual South China tigers and other tiger subspecies. Only results with FDR < 0.05 were retained. Table S20. Pairwise relatedness estimates based on allelic identity-by-descent (IBD). Table S21. Inbreeding coefficients and ROH information. Table S22. Deleterious mutations segregating across and within six tiger subspecies. Table S23. Individual homozygote and heterozygote SNP counts per impact category in each tiger subspecies.