Genomic regions and genes affected by putative selection identified using HapFLK and ROH analyses, and overlapping regions identified by FST calculations in Yaroslavl and Kholmogor cattle breeds.

Note: BTA, Bos taurus autosome; Start_SNP and End_SNP, the names of the start and end SNPs on Bovine HD BeadChip (Illumina Inc., USA) flanking the genomic regions under putative selection; breed: YRSL, Yaroslavl; KHLM, Kholmogor; HOL, Holsteins; methods: FST, top 0.1% SNPs by FST value during pair-wise breed comparison; hapFLK, regions identified by hapFLK analysis; ROH_50% and ROH_70%, ROH segments distributed in more than 50% and more than 70% of animals, respectively, within each of the studied breed (the ROH segments identified in more than 70% animals are shown in bold); nSNP, number of SNPs localised within the identified genomic region; Start position and End position, start and end positions of the genomic region affected by putative selection (Mbp) according to Bos_taurus_UMD_3.1.1 genome assembly (https://www.ncbi.nlm.nih.gov/assembly/GCF_000003055.6); length, the length of the identified genomic regions under putative selection (Mbp); No. of genes, number of genes localised within identified genomic regions; genes, the list of genes localised within identified genomic regions (genes localised within ROH segments identified in more than 70% of animals are shown in bold). (XLSX)